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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. COLEC12, collectin sub-family member 12
Sequence ID:NM_130386
NM_030781
RefSeqGene ID:NG_030342
Entrez Gene ID:81035
Ensembl ID:ENSG00000158270

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18pter-p11.3

Chromosomal Position (from UCSC)

Chromosomal Position:18: 319360 - 500584

Transcript StartTranscript EndChromosomal Start Chromosomal End
2710319355320063
711856321661321806
857966331667331776
9671103333006333142
11041592334741335229
15932639346294347340
26402738348064348162
27392861357399357521
28622912480706480756
29133134500507500728

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30344546Full LengthBC060789collectin sub-family member 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_569057  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_130386 NP_569057   Lectin_C
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC060789 AAH60789 Q5KU26
JF432431 ADZ15648  
AB038518 BAB39147 Q5KU26
AB052103 BAB39148 Q5KU26
AB005145 BAB72147 Q5KU26
AB034251 BAD83592 Q5KU26
AL713657 CAD28466 Q5KU26

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COLEC12 NP_569057 R.norvegicus Colec12 361289   NP_001020892 93
M.musculus Colec12 140792 Gene Info NP_569716 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)