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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PGD, phosphogluconate dehydrogenase
Sequence ID:NM_002631
Entrez Gene ID:5226
Ensembl ID:ENSG00000142657

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 10459125 - 10480200

 Exon Info From UCSC:
NM_002631

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2819330Full LengthBC000368phosphogluconate dehydrogenase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002622  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_002631 NP_002622 P52209 EC 1.1.1.44 6PGD
NAD_binding_2

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U30255 AAA75302 P52209 EC 1.1.1.44
BC000368 AAH00368 P52209 EC 1.1.1.44
AK290404 BAF83093 P52209 EC 1.1.1.44
AK296889 BAG59448 B4DL86  
AK298830 BAG60960 B4DQJ8  
AK300952 BAG62580 B4DV68  
AK303898 BAG64830 A9Z1X1  
AK304423 BAG65252 B4E2U0  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PGD NP_002622 M.musculus Pgd 110208 Gene Info NP_001074743 94
R.norvegicus LOC100360180 100360180   XP_002729611 93
A.gambiae AgaP_AGAP004197 1274031   XP_313091 72
D.melanogaster Pgd 31185   NP_476860 72
C.elegans T25B9.9 177971   NP_501998 70
S.pombe SPBC660.16 2541146   NP_595095 68
N.crassa NCU03100 3881108   XP_964959 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)