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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SGCA, sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)
Sequence ID:NM_000023
NM_001135697
RefSeqGene ID:NG_008889
Entrez Gene ID:6442
Ensembl ID:ENSG00000108823

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 2D 

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 48243372 - 48253225

 Exon Info From UCSC:
NM_000023
NM_001135697

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5222483Full LengthBC025702sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000014  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000023 NP_000014 Q16586 Sarcoglycan_2
NM_001135697 NP_001129169    

Related Sequences

 
mRNAGenPeptSwissProt
L34355 AAA35510 Q16586
L35853 AAA50461 Q16586
U08895 AAA81637 Q16586
L46810 AAC37583 Q16586
BC025702 AAH25702 Q16586
DQ893777 ABM84703  
AK290622 BAF83311 Q16586
AK300710 BAH13330 B7Z6P4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SGCA NP_000014 M.musculus Sgca 20391 Gene Info NP_001129552 89
R.norvegicus Sgca 303468   NP_001100509 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)