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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC45A1, solute carrier family 45, member 1
Sequence ID:NM_001080397
Entrez Gene ID:50651
Ensembl ID:ENSG00000162426

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 8390197 - 8404214

NM_001080397 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
139783843898384785
39849083853578385449
49171583858778386101
716144383902688390995
1444159783954968395649
1598177483978758398051
1775198083995528399757
1981240084038068404225

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062822Full LengthBC156980solute carrier family 45, member 1
100062402BC156140solute carrier family 45, member 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001080397 NP_001073866 Q9Y2W3  

Related Sequences

 
mRNAGenPeptSwissProt
AF118274 AAD27583 Q9Y2W3
BC156140 AAI56141  
BC156980 AAI56981 Q9Y2W3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC45A1 NP_001073866 M.musculus Slc45a1 242773 Gene Info NP_776135 91
R.norvegicus Slc45a1 246258   NP_653348 91
A.gambiae AgaP_AGAP000137 1272131   XP_311009 41
A.thaliana SUT2 814817   NP_178389 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)