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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PGAP3, post-GPI attachment to proteins 3
Sequence ID:NM_033419
Entrez Gene ID:93210
Ensembl ID:ENSG00000161395

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 37827394 - 37844278

NM_033419 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2317663782737537829118
176719713782930337829507
197221083782976637829902
210921703783024537830306
217122333783086937830931
223423863784084937841001
238724843784217437842271
248527083784408637844309

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3855206Full LengthBC010652per1-like domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_219487  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_033419 NP_219487 Q96FM1 Per1

Related Sequences

 
mRNAGenPeptSwissProt
AF217980 AAG17223 Q9HBS1
BC010652 AAH10652 Q96FM1
AY358437 AAQ88803 Q96FM1
AK075474 BAC11642 Q96FM1
AB088396 BAC55580 Q96FM1
AK289612 BAF82301 A8K0P7
AK294639 BAG57818 B4DGK7
AK301106 BAG62705 B4DVJ3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PGAP3 NP_219487 M.musculus Pgap3 320655 Gene Info NP_001028709 85
D.melanogaster CG3271 35570   NP_610223 41
A.gambiae AgaP_AGAP005392 1276093   XP_315401 40
N.crassa NCU08609 3880966   XP_964817 38
A.thaliana AT1G16560 838226   NP_973842 37
S.pombe SPAC823.07 2543664   NP_593834 37
S.cerevisiae PER1 850411   NP_009973 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)