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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NPHP4, Nephronophthisis 4
Sequence ID:NM_015102
RefSeqGene ID:NG_011724
Entrez Gene ID:261734
Ensembl ID:ENSG00000131697

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 5922877 - 6021894

 Exon Info From UCSC:
NM_015102

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5295140Full LengthBC040520nephronophthisis 4
5298892IncompleteBC050076nephronophthisis 4

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015102 NP_055917 O75161  

Related Sequences

 
mRNAGenPeptSwissProt
BC040520 AAH40520 Q8IWC0
AY118228 AAM78558 O75161
AF537130 AAN06814 O75161
AB014573 BAA31648 O75161
AK127333 BAC86935 Q6ZSL3
AK124074 BAG53998 B3KW36
AL117405 CAB55906 Q9UFQ2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NPHP4 NP_055917 M.musculus Nphp4 260305 Gene Info NP_700473 79
R.norvegicus Nphp4 313749   NP_001032739 78
C.elegans nph-4 179620   NP_505982 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)