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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NCOR1, nuclear receptor corepressor 1
Sequence ID:NM_001190438
NM_001190440
NM_006311
Entrez Gene ID:9611
Ensembl ID:ENSG00000141027

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 15989712 - 15995231

 Exon Info From UCSC:
NM_001190438
NM_001190440
NM_006311

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860107Full LengthBC167431nuclear receptor co-repressor 1
100069131Full LengthBC172437nuclear receptor co-repressor 1
3836580IncompleteBC026028nuclear receptor co-repressor 1
3904576IncompleteBC056862nuclear receptor co-repressor 1
5190073IncompleteBC058511nuclear receptor co-repressor 1
5474358IncompleteBC068996nuclear receptor co-repressor 1
6024800IncompleteBC050594nuclear receptor co-repressor 1
40147982IncompleteBC142648nuclear receptor co-repressor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006302  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190438 NP_001177367    
NM_001190440 NP_001177369    
NM_006311 NP_006302 O75376 Myb_DNA-binding

Related Sequences

 
mRNAGenPeptSwissProt
AF044209 AAC33550 O75376
BC026028 AAH26028 Q05CG3
BC050594 AAH50594 Q86W52
BC056862 AAH56862 Q6PGR4
BC058511 AAH58511 Q6PDT8
BC068996 AAH68996 Q6NTH1
BC107772 AAI07773 Q3B773
BC142648 AAI42649 A5PKW7
BC167431 AAI67431 O75376
BC172437 AAI72437  
AF303584 AAO32940 Q86YY2
AF303585 AAO32941 Q86YY1
AF303586 AAO32942 Q86YY0
AF087856 AAP97166 Q7Z516
AB028970 BAA82999 O75376
AB028450 BAA83818 Q9UPY2
AB028451 BAA83819 Q9UPY1
AK295893 BAG58687 B4DJ25
AK302746 BAG63960 B4DZ48
AL137641 CAB70854 Q9NSZ0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NCOR1 NP_006302 M.musculus Ncor1 20185 Gene Info NP_035438 93
R.norvegicus Ncor1 54299   XP_577103 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta