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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPAIN, RPA interacting protein
Sequence ID:NM_001160267
NM_032308
NR_027678
NR_027680
NR_027681
NM_001033002
NM_001160243
NM_001160244
NM_001160246
NM_001160266
NR_027679
NR_027682
NR_027683
NR_027684
NR_027685
Entrez Gene ID:84268
Ensembl ID:ENSG00000129197

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 5323206 - 5336197

 Exon Info From UCSC:
NM_001160267
NM_001033002
NM_001160243
NM_001160244
NM_001160246
NM_001160266

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820882Full LengthBC004451RPA interacting protein
5493799Full LengthBC051849RPA interacting protein

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001033002 NP_001028174 Q86UA6  
NM_001160243 NP_001153715    
NM_001160244 NP_001153716    
NM_001160246 NP_001153718    
NM_001160266 NP_001153738    

Related Sequences

 
mRNAGenPeptSwissProt
BC004451 AAH04451 Q86UA6
BC046349 AAH46349 Q86UA6
BC051849 AAH51849 Q86UA6
AY680654 AAT80872 Q86UA6
AY680655 AAT80873 Q86UA6
AY680656 AAT80874 Q86UA6
AY680657 AAT80875 Q86UA6
AY680658 AAT80876 Q86UA6
AY680659 AAT80877 Q86UA6
AY680660 AAT80878 Q86UA6
AY775314 AAX14368 Q86UA6
AY775315 AAX14369 Q86UA6
AY775316 AAX14370 Q86UA6
AY775317 AAX14371 Q86UA6
AY775318 AAX14372 Q86UA6
AY775319 AAX14373 Q86UA6
AY775320 AAX14374 Q86UA6
AY775321 AAX14375 Q86UA6
AY775323 AAX14377 Q86UA6
HQ448567 ADQ33045  
AK098491 BAC05317 Q8N1H0
AK096001 BAG53195 B3KTT3
AK295394 BAG58348 B4DI36
AK300409 BAG62139 Q86UA6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPAIN NP_001028174 R.norvegicus Rpain 287463   NP_001028232 76
M.musculus Rpain 69723 Gene Info NP_081462 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)