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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VPS53, Vacuolar protein sorting 53 homolog (S. cerevisiae)
Sequence ID:NM_001128159
NM_018289
Entrez Gene ID:55275
Ensembl ID:ENSG00000141252

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 421176 - 421752

 Exon Info From UCSC:
NM_001128159
NM_018289

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3504453Full LengthBC006116vacuolar protein sorting 53 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060759  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001128159 NP_001121631    
NM_018289 NP_060759   Vps53_N

Related Sequences

 
mRNAGenPeptSwissProt
BC006116 AAH06116 Q5VIR6
BC029560 AAH29560 Q8NCR1
AF246287 AAK27973 Q5VIR6
AF318335 AAL55842 Q5VIR6
AY444797 AAS20944 Q5VIR6
EU021218 ABW03005 Q5VIR6
EU434648 ACA21423 B1AA15
EU434649 ACA21424 B1AA16
EU434650 ACA21425 B1AA17
AK001841 BAA91935 Q5VIR6
AK290343 BAF83032 Q5VIR6
AK092532 BAG52568 B3KS06
AK299543 BAH13062 B7Z5X6
XM_001714635 XP_001714687  
XM_001723217 XP_001723269  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS53 NP_001121631 R.norvegicus Vps53 287535   NP_001099283 97
M.musculus Vps53 68299 Gene Info NP_080940 97
A.gambiae AgaP_AGAP006623 1277209   XP_316653 54
D.melanogaster CG3338 33640   NP_608825 54
C.elegans T05G5.8 176377   NP_499157 41
A.thaliana AT1G50970 841519   NP_175510 36
A.thaliana HIT1 841472   NP_564573 35
N.crassa NCU03024 3881560   XP_965410 33
S.pombe vps53 2542930   NP_593341 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)