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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CNOT1, CCR4-NOT transcription complex, subunit 1
Sequence ID:NM_001265612
NM_016284
NM_206999
NR_049763
Entrez Gene ID:23019
Ensembl ID:ENSG00000125107

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 58553853 - 58610463

 Exon Info From UCSC:
NM_016284
NM_206999

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5266600Full LengthBC040523CCR4-NOT transcription complex, subunit 1
3504586IncompleteBC000779CCR4-NOT transcription complex, subunit 1
3913601IncompleteBC024317CCR4-NOT transcription complex, subunit 1
4310622IncompleteBC011861CCR4-NOT transcription complex, subunit 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057368  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001265612 NP_001252541    
NM_016284 NP_057368 A5YKK6 Not1
NM_206999 NP_996882    

Related Sequences

 
mRNAGenPeptSwissProt
AF110778 AAF14861 A5YKK6
BC000779 AAH00779 A5YKK6
BC024317 AAH24317 A5YKK6
BC040523 AAH40523 A5YKK6
EF553522 ABQ66268 A5YKK6
AB023224 BAA76851 A5YKK6
AK056927 BAG51828 B3KPW6
AK092885 BAG52622 B3KS60
AK300281 BAG62040 B4DTM8
AK302495 BAG63779 B4DYL7
AK301092 BAH13408 B7Z6X2
AL117492 CAB55960 A5YKK6
BX537840 CAD97851 A5YKK6
CR749237 CAH18093 A5YKK6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNOT1 NP_057368 M.musculus Cnot1 234594 Gene Info NP_694804 99
R.norvegicus Cnot1 291841   NP_001128312 99
A.gambiae AgaP_AGAP009057 1280014   XP_319808 55
D.melanogaster Not1 5740252   NP_001097242 51
C.elegans let-711 175971   NP_498516 43
A.thaliana AT1G02080 839244   NP_001184889 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)