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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. POLR3E, polymerase (RNA) III (DNA directed) polypeptide E (80kD)
Sequence ID:NM_001258033
Entrez Gene ID:55718
Ensembl ID:ENSG00000058600

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 22308775 - 22340412

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3356711Full LengthBC000285polymerase (RNA) III (DNA directed) polypeptide E (80kD)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060589  

Protein Infomation

NM_001258033 NP_001244962    
NM_001258034 NP_001244963    
NM_001258035 NP_001244964    
NM_001258036 NP_001244965    
NM_018119 NP_060589 Q9NVU0 Sin_N

Related Sequences

BC000285 AAH00285 Q9NVU0
AY092085 AAM18215 Q9NVU0
AK001371 BAA91655 Q9NVU0
AB040885 BAA95976 Q9NVU0
AK023160 BAB14437 Q9NVU0
AK023231 BAB14481 Q9NVU0
AK222789 BAD96509 Q53GZ2
AK293300 BAG56821 B4DDR0
AK296813 BAG59386 B4DL24
AK300735 BAG62408 B4DUP6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens POLR3E NP_060589 M.musculus Polr3e 26939 Gene Info NP_079574 93
R.norvegicus Polr3e 361640   NP_001101973 92
A.gambiae AgaP_AGAP005922 1276589   XP_315952 35
D.melanogaster Sin 40325   NP_524192 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)