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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTMA, Prothymosin, alpha
Sequence ID:NM_001099285
NM_002823
Entrez Gene ID:5757
Ensembl ID:ENSG00000187514

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q37.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 232573416 - 232577561

 Exon Info From UCSC:
NM_001099285
NM_002823

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3610808Full LengthBC003510prothymosin, alpha
3832454Full LengthBC051265prothymosin, alpha
4277490Full LengthBC022433prothymosin, alpha
4335961Full LengthBC034921prothymosin, alpha
4830132Full LengthBC066905prothymosin, alpha
5017164Full LengthBC098420prothymosin, alpha
5112610Full LengthBC071647prothymosin, alpha
6205582Full LengthBC070480prothymosin, alpha
6425103Full LengthBC071879prothymosin, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002814  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001099285 NP_001092755 P06454  
NM_002823 NP_002814 Q8TBK9 Prothymosin

Related Sequences

 
mRNAGenPeptSwissProt
M26708 AAA60213 P06454
Q53S24
M14630 AAA61182 P06454
M14483 AAA61183 P06454
Q53S24
M14794 AAA61184 Q7KZ52
BC003510 AAH03510 Q53S24
BC022433 AAH22433 Q8TBK9
BC034921 AAH34921 Q53S24
BC051265 AAH51265 P06454
Q53S24
BC066905 AAH66905 P06454
Q53S24
BC070480 AAH70480 P06454
Q53S24
BC071647 AAH71647 P06454
Q53S24
BC071879 AAH71879 P06454
Q53S24
BC098420 AAH98420 Q53S24
AF348514 AAK30146 P06454
Q53S24
AY169282 AAO18189 Q86YS2
AF452640 AAP97694 Q7Z4R6
DQ892963 ABM83889  
DQ896210 ABM87209  
AK223605 BAD97325 Q53S24
AK314106 BAG36799 Q53S24

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTMA NP_001092755 R.norvegicus Ptma 29222   NP_068508 95
R.norvegicus LOC100359583 100359583   XP_002728075 95
M.musculus Gm15466 100504173   XP_003085391 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

NCI-Nature Pathway Interaction Database