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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RBFOX1, RNA binding protein, fox-1 homolog (C. elegans) 1
Sequence ID:NM_018723
NM_001142333
NM_145893
NM_145891
NM_145892
NM_001142334
RefSeqGene ID:NG_011881
Entrez Gene ID:54715
Ensembl ID:ENSG00000078328

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 6069094 - 7703848

 Exon Info From UCSC:
NM_018723
NM_001142333
NM_145893
NM_145891
NM_145892
NM_001142334

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8322743Full LengthBC113691ataxin 2-binding protein 1
9052331IncompleteBC143816ataxin 2-binding protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061193  NP_665898  NP_665899  NP_665900  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142333 NP_001135805    
NM_001142334 NP_001135806    
NM_018723 NP_061193 Q9NWB1 RRM_1
NM_145891 NP_665898   RRM_1
NM_145892 NP_665899   RRM_1
NM_145893 NP_665900   RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
AF107203 AAF78291 Q9NWB1
BC113691 AAI13692 Q9NWB1
BC143816 AAI43817 B7ZLH9
AF229057 AAL71904 Q9NWB1
AF094849 AAL83405 Q9NWB1
AF109106 AAL83406 Q9NWB1
AF448859 AAP41925 Q9NWB1
AK001027 BAA91472 Q9NWB1
AB208826 BAD92063 Q59HD3
AK293951 BAH11633 B7Z1U7
AK299664 BAH13094 B7Z608
AL713700 CAD28499 Q8TCM0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RBFOX1 NP_665899 M.musculus Rbfox1 268859 Gene Info NP_067452 96
R.norvegicus Rbfox1 302920   NP_001100444 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)