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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VPS13A, vacuolar protein sorting 13 homolog A (S. cerevisiae)
Sequence ID:NM_001018037
NM_001018038
NM_015186
NM_033305
RefSeqGene ID:NG_008931
Entrez Gene ID:23230
Ensembl ID:ENSG00000197969

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
CHOREOACANTHOCYTOSIS 

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 79932567 - 79999999

 Exon Info From UCSC:
NM_001018037
NM_001018038
NM_015186
NM_033305

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3450315IncompleteBC020576vacuolar protein sorting 13 homolog A (S. cerevisiae)
5270397IncompleteBC041852vacuolar protein sorting 13 homolog A (S. cerevisiae)
100069605BC172755vacuolar protein sorting 13 homolog A (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001018047  NP_056001  NP_001018048  NP_150648  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001018037 NP_001018047   DUF1162
NM_001018038 NP_001018048   DUF1162
NM_015186 NP_056001   DUF1162
NM_033305 NP_150648 Q96RL7 DUF1162

Related Sequences

 
mRNAGenPeptSwissProt
BC020576 AAH20576 Q96RL7
BC041852 AAH41852 Q96RL7
BC172755 AAI72755 Q96RL7
AF337532 AAK61861 Q96RL7
AB023203 BAA76830 Q96RL7
AK022967 BAB14337 Q96RL7
AB054005 BAB59128 Q96RL7
AK124024 BAG53993 B3KW31
AJ608769 CAE75581 Q96RL7
AJ626859 CAF25186 Q96RL7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS13A NP_150648 M.musculus Vps13a 271564 Gene Info NP_766616 85
R.norvegicus Vps13a 309243   NP_001094445 85
A.gambiae AgaP_AGAP005082 1274763   XP_558472 34
D.melanogaster Vps13 35693   NP_610299 33
C.elegans T08G11.1 172705   NP_740900 32
N.crassa NCU05837 3876244   XP_960097 28
S.cerevisiae VPS13 850619   NP_013060 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)