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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLCN7, chloride channel, voltage-sensitive 7
Sequence ID:NM_001114331
NM_001287
RefSeqGene ID:NG_007567
Entrez Gene ID:1186
Ensembl ID:ENSG00000103249

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
OSTEOPETROSIS, AUTOSOMAL RECESSIVE 4 
OSTEOPETROSIS,AUTOSOMAL DOMINANT 2 

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 1495810 - 1525013

 Exon Info From UCSC:
NM_001114331
NM_001287

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4026193Full LengthBC012737chloride channel 7
3615790IncompleteBC004946chloride channel 7
3628560IncompleteBC006158chloride channel 7
3904225IncompleteBC015235chloride channel 7
40005215IncompleteBC109196chloride channel 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001278  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001114331 NP_001107803    
NM_001287 NP_001278 P51798 CBS
Voltage_CLC

Related Sequences

 
mRNAGenPeptSwissProt
U88844 AAB48530 P51798
AF224741 AAF34711 P51798
BC004946 AAH04946 Q9BSM4
BC006158 AAH06158 Q9BRN4
BC012737 AAH12737 P51798
BC109196 AAI09197 Q2VPA2
DQ896433 ABM87432  
EU176438 ABW03889  
AK291404 BAF84093 P51798
AK292136 BAF84825 A8K7X1
AK056551 BAG51745 B3KPN3
AK096963 BAG53401 B3KUD9
AK122944 BAG53810 B3KVJ8
AK128285 BAG54655 B3KXZ3
AK304796 BAG65546 B4E3N4
AK315978 BAH14349 B7Z9L3
Z67743 CAA91556 P51798

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLCN7 NP_001278 M.musculus Clcn7 26373 Gene Info NP_036060 97
R.norvegicus Clcn7 29233   NP_113756 97
A.gambiae AgaP_AGAP007499 1269729   XP_308378 53
D.melanogaster ClC-b 36381   NP_610798 52
C.elegans clh-6 179655   NP_506022 51
A.thaliana AT5G33280 833300   NP_198313 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)