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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAB40C, RAB40C, member RAS oncogene family
Sequence ID:NM_001172663
NM_001172664
NM_001172665
NM_001172666
NM_021168
Entrez Gene ID:57799
Ensembl ID:ENSG00000197562

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 678322 - 679273

 Exon Info From UCSC:
NM_001172663
NM_001172664
NM_001172665
NM_001172666
NM_021168

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4826800Full LengthBC028696RAB40C, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066991  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001172663 NP_001166134    
NM_001172664 NP_001166135    
NM_001172665 NP_001166136    
NM_001172666 NP_001166137    
NM_021168 NP_066991 Q6PIU5 Ras
SOCS_box

Related Sequences

 
mRNAGenPeptSwissProt
BC028696 AAH28696 Q6PIU5
AY823398 AAV83924 Q5PXE8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAB40C NP_066991 R.norvegicus Rab40c 359728   NP_872616 99
M.musculus Rab40c 224624 Gene Info NP_631893 99
A.gambiae AgaP_AGAP000841 1277354   XP_316810 66
D.melanogaster Rab40 32195   NP_727611 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)