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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. DDX28, DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
Sequence ID:NM_018380
Entrez Gene ID:55794
Ensembl ID:ENSG00000182810

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 68055208 - 68057345

NM_018380 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1926106805517868057769

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4130937Full LengthBC024273DEAD (Asp-Glu-Ala-Asp) box polypeptide 28

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060850  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_018380 NP_060850 Q9NUL7 EC 3.6.4.13 DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC024273 AAH24273 Q9NUL7 EC 3.6.4.13
AK002144 BAA92106 Q9NUL7 EC 3.6.4.13

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDX28 NP_060850 M.musculus Ddx28 71986 Gene Info NP_082314 81
R.norvegicus Ddx28 364995   NP_001102368 79
D.melanogaster KH1 33254   NP_608544 38
A.thaliana RH39 826559   NP_849348 37
A.gambiae AgaP_AGAP012856 1267546   XP_306103 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)