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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VIM, vimentin
Sequence ID:NM_003380
RefSeqGene ID:NG_012413
Entrez Gene ID:7431
Ensembl ID:ENSG00000026025

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 17271293 - 17279592

NM_003380 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12661727025717270522
2679761727127417271983
97710371727264817272708
103811331727558517275680
113412951727576817275929
129614211727669117276816
142216421727716717277387
164316861727784417277887
168717721727829217278377
177321361727922817279591

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2985712Full LengthBC000163vimentin
3637336Full LengthBC030573vimentin
4823475Full LengthBC066956vimentin
4731764IncompleteBC031031vimentin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003371  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003380 NP_003371 P08670 Filament
Filament_head

Related Sequences

 
mRNAGenPeptSwissProt
M25246 AAA61282 P08670
BC000163 AAH00163 P08670
BC030573 AAH30573 P08670
BC066956 AAH66956 P08670
AF328728 AAN09720 P08670
AK056766 BAB71275 P08670
AK097336 BAC05002 P08670
AK222482 BAD96202 Q53HU8
AK222507 BAD96227 P08670
AK222602 BAD96322 P08670
AK290643 BAF83332 P08670
AK091813 BAG52420 B3KRK8
X16478 CAA34499 P08670
X56134 CAA39600 P08670
Z19554 CAA79613 P08670
CR407690 CAG28618 P08670

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VIM NP_003371 M.musculus Vim 22352 Gene Info NP_035831 97
R.norvegicus Vim 81818   NP_112402 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)