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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LDB1, LIM domain binding 1
Sequence ID:NM_001113407
NM_003893
Entrez Gene ID:8861
Ensembl ID:ENSG00000198728

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10q24-q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 103867787 - 103871261

 Exon Info From UCSC:
NM_001113407
NM_003893

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2964724Full LengthBC000482LIM domain binding 1
2964724Full LengthBC009246LIM domain binding 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003884  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001113407 NP_001106878 Q86U70  
NM_003893 NP_003884 Q86U70 LIM_bind

Related Sequences

 
mRNAGenPeptSwissProt
AF064491 AAC28341 Q86U70
AF068652 AAC77818 Q86U70
BC000482 AAH00482 Q86U70
BC009246 AAH09246 Q86U70
BT007054 AAP35703 Q86U70
DQ890772 ABM81698  
DQ893933 ABM84859  
AB016485 BAA31991 Q86U70
AB250384 BAE95402 Q86U70
AK300588 BAG62286 Q86U70

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LDB1 NP_001106878 R.norvegicus Ldb1 309447   NP_001101071 100
M.musculus Ldb1 16825 Gene Info NP_001106879 100
C.elegans ldb-1 181292   NP_509846 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta