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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC10A6, solute carrier family 10 (sodium/bile acid cotransporter family), member 6
Sequence ID:NM_197965
Entrez Gene ID:345274
Ensembl ID:ENSG00000145283

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 87744840 - 87770268

NM_197965 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14358774462087745054
4365938774657287746729
5947698774914587749320
7708588775294487753032
8599778775445887754576
97815028776989187770415

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40004572Full LengthBC107051solute carrier family 10 (sodium/bile acid cotransporter family), member 6
40004575Full LengthBC107052solute carrier family 10 (sodium/bile acid cotransporter family), member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_932069  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_197965 NP_932069 Q3KNW5 SBF

Related Sequences

 
mRNAGenPeptSwissProt
BC107051 AAI07052 Q3KNW5
BC107052 AAI07053 Q3KNW5
EF437223 ABO38126 Q3KNW5
AJ583502 CAE47477 Q3KNW5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC10A6 NP_932069 M.musculus Slc10a6 75750 Gene Info NP_083691 71
R.norvegicus Slc10a6 289459   NP_932166 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)