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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CSPG5, chondroitin sulfate proteoglycan 5 (neuroglycan C)
Sequence ID:NM_001206942
NM_001206943
NM_001206944
NM_001206945
NM_006574
RefSeqGene ID:NG_029493
Entrez Gene ID:10675
Ensembl ID:ENSG00000114646

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 47603984 - 47620188

Transcript StartTranscript EndChromosomal Start Chromosomal End
195414760372847604250
5426174761064147610716
6188064761417547614363
80719024761832247619417
190321754762008647620358

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40080655BC111583chondroitin sulfate proteoglycan 5 (neuroglycan C)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006565  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001206942 NP_001193871    
NM_001206943 NP_001193872 O95196  
NM_001206944 NP_001193873    
NM_001206945 NP_001193874    
NM_006574 NP_006565   Chon_Sulph_att
Neural_ProG_Cyt

Related Sequences

 
mRNAGenPeptSwissProt
AF059274 AAC69612 O95196
BC111583 AAI11584  
AF461087 AAQ04774 O95196
AF461088 AAQ04775 O95196
AF461089 AAQ04776 O95196
AK294621 BAH11826 B7Z2E0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CSPG5 NP_001193872 R.norvegicus Cspg5 50568   NP_598413 88
M.musculus Cspg5 29873 Gene Info NP_001159745 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)