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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VSX2, visual system homeobox 2
Sequence ID:NM_182894
RefSeqGene ID:NG_013092
Entrez Gene ID:338917
Ensembl ID:ENSG00000119614

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
MICROPHTHALMIA WITH COLOBOMA 3 
MICROPHTHALMIA, ISOLATED 2 

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 74706174 - 74729441

NM_182894 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14607470617474706633
4615457470788474707968
5466697471186774711990
6708507472630474726484
85129887472729674729433

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40112640Full LengthBC128153visual system homeobox 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_878314  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_182894 NP_878314 P58304 Homeobox
OAR

Related Sequences

 
mRNAGenPeptSwissProt
BC128153 AAI28154 P58304
AY336059 AAQ01593 P58304

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VSX2 NP_878314 M.musculus Vsx2 12677 Gene Info NP_031727 97
R.norvegicus Vsx2 171360   NP_001162599 97
C.elegans ceh-10 175811   NP_498251 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)