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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HAPLN3, Hyaluronan and proteoglycan link protein 3
Sequence ID:NM_178232
Entrez Gene ID:145864
Ensembl ID:ENSG00000140511

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15q26.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 89420858 - 89438776

NM_178232 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
29698942051989421486
97012728942219789422499
127316418942458789424955
164218128943040589430575
181318938943868989438769

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5090960Full LengthBC062320hyaluronan and proteoglycan link protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_839946  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178232 NP_839946 Q96S86 Xlink
V-set

Related Sequences

 
mRNAGenPeptSwissProt
BC062320 AAH62320 Q96S86
AY037161 AAK67639 Q96S86
AY262759 AAP22051 Q96S86
AY358500 AAQ88864 Q96S86
HQ447645 ADQ32130  
AK292055 BAF84744 Q96S86
AK292103 BAF84792 A8K7T8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HAPLN3 NP_839946 R.norvegicus Hapln3 308773   NP_001008559 82
M.musculus Hapln3 67666 Gene Info NP_839986 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)