Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS13, ribosomal protein S13
Sequence ID:NM_001017
Entrez Gene ID:6207
Ensembl ID:ENSG00000110700

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 17095979 - 17099214

NM_001017 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2751709593917096012
761761709664317096743
1773461709700017097169
3474251709871417098792
4264741709897517099023
4755291709916517099219

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2899987Full LengthBC006772ribosomal protein S13
2961637Full LengthBC000475ribosomal protein S13
4388273Full LengthBC029732ribosomal protein S13
4816284Full LengthBC066322ribosomal protein S13
6025884Full LengthBC100032ribosomal protein S13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001008  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001017 NP_001008 P62277 Ribosomal_S15
Ribosomal_S13_N

Related Sequences

 
mRNAGenPeptSwissProt
L01124 AAA60283 P62277
L05090 AAC15854 P62277
BC000475 AAH00475 P62277
BC006772 AAH06772 P62277
BC029732 AAH29732 P62277
BC066322 AAH66322 P62277
BC100032 AAI00033 P62277
DQ891107 ABM82033  
DQ894288 ABM85214  
AK312060 BAG34996 P62277
X79239 CAA55821 P62277

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS13 NP_001008 M.musculus Rps13 68052 Gene Info NP_080809 100
R.norvegicus Rps13 161477   NP_569116 100
R.norvegicus LOC684988 684988   XP_001053043 100
D.melanogaster RpS13 34149   NP_001033885 87
A.gambiae RS13_ANOGA 1276616   XP_315982 84
C.elegans rps-13 175901   NP_498393 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)