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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LEPREL4, leprecan-like 4
Sequence ID:NM_006455
Entrez Gene ID:10609
Ensembl ID:ENSG00000141696

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 39958544 - 39968251

NM_006455 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1910443995820539959230
104511893995953839959682
119012733996304739963130
127414193996411039964255
142015483996595739966085
154917203996711439967285
172118733996738339967535
187426193996770539968450

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3510378Full LengthBC011701synaptonemal complex protein SC65
3510406Full LengthBC001047synaptonemal complex protein SC65
4130726Full LengthBC007942synaptonemal complex protein SC65

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006455 NP_006446 Q92791  

Related Sequences

 
mRNAGenPeptSwissProt
U47621 AAC51792 Q92791
BC001047 AAH01047 Q92791
BC007942 AAH07942 Q92791
BC011701 AAH11701 Q92791
DQ893598 ABM84524  
EU831534 ACE86453  
EU831442 ACE87129  
AK222945 BAD96665 Q92791
AK301301 BAG62857 B4DVZ5
AJ250583 CAC16786 Q92791

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LEPREL4 NP_006446 M.musculus Leprel4 66180 Gene Info NP_789800 93
R.norvegicus Leprel4 59101   NP_067592 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)