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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PTGDS, prostaglandin D2 synthase 21kDa (brain)
Sequence ID:NM_000954
Entrez Gene ID:5730
Ensembl ID:ENSG00000107317

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.2-q34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 139871956 - 139876190

NM_000954 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1189139871955139872143
190329139873444139873583
330406139873674139873750
407523139874397139874513
524625139874634139874735
626648139875284139875306
649811139876030139876192

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4294999Full LengthBC005939prostaglandin D2 synthase 21kDa (brain)
5211974IncompleteBC041463prostaglandin D2 synthase 21kDa (brain)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000945  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000954 NP_000945 P41222 EC 5.3.99.2 Lipocalin

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M61900 AAA36494 P41222 EC 5.3.99.2
BC005939 AAH05939 P41222 EC 5.3.99.2
AY026356 AAK07679 P41222 EC 5.3.99.2
BT019921 AAV38724 P41222 EC 5.3.99.2
BT019922 AAV38725 P41222 EC 5.3.99.2
AK312817 BAG35674 P41222 EC 5.3.99.2
AK075333 BAG52113 P41222 EC 5.3.99.2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTGDS NP_000945 M.musculus Ptgds 19215 Gene Info NP_032989 72
R.norvegicus Ptgds 25526   NP_037147 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)