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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CD47, CD47 molecule
Sequence ID:NM_001777
NM_198793
NM_001025079
NM_001025080
Entrez Gene ID:961
Ensembl ID:ENSG00000196776

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q13.1-q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 107762146 - 107764697

 Exon Info From UCSC:
NM_001777
NM_198793
NM_001025079

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3857911Full LengthBC012884CD47 molecule
4303534Full LengthBC010016CD47 molecule
5260986Full LengthBC037306CD47 molecule
5287620IncompleteBC045593CD47 molecule

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001768  NP_942088  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001777 NP_001768 Q08722 CD47
V-set_CD47
NM_198793 NP_942088   CD47
V-set_CD47

Related Sequences

 
mRNAGenPeptSwissProt
BC010016 AAH10016 Q08722
BC012884 AAH12884 Q08722
BC037306 AAH37306 Q08722
BT006907 AAP35553 Q08722
DQ890756 ABM81682  
DQ891811 ABM82737  
DQ893920 ABM84846  
AK289813 BAF82502 Q08722
X69398 CAA49196 Q08722
Z25521 CAA80977 Q08722

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CD47 NP_001768 M.musculus Cd47 16423 Gene Info NP_034711 71
R.norvegicus Cd47 29364   NP_062068 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)