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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PXN, paxillin
Sequence ID:NM_001080855
NM_001243756
NM_002859
NM_025157
RefSeqGene ID:NG_029820
Entrez Gene ID:5829
Ensembl ID:ENSG00000089159

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 120655864 - 120657728

 Exon Info From UCSC:
NM_001080855
NM_002859
NM_025157

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020777Full LengthBC136787paxillin
9020784Full LengthBC136794paxillin
9052931Full LengthBC144410paxillin
3448445IncompleteBC010498paxillin
3534159IncompleteBC003647paxillin
3852361IncompleteBC015217paxillin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002850  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001080855 NP_001074324 P49023  
NM_001243756 NP_001230685    
NM_002859 NP_002850   LIM
Paxillin
NM_025157 NP_079433    

Related Sequences

 
mRNAGenPeptSwissProt
U14588 AAC50104 P49023
BC003647 AAH03647 Q9BTK0
BC052611 AAH52611 Q7Z7K5
BC136787 AAI36788 P49023
BC136794 AAI36795 P49023
BC144410 AAI44411 P49023
D86862 BAA18997 P49023
D86863 BAA18998 P49023
AK026695 BAB15529 Q9H5U1
AK128712 BAC87586 Q6ZQU7
AB209034 BAD92271 Q59GS5
AK314204 BAG36880 P49023
AK122964 BAG53822 B3KVL0
AK298057 BAG60351 B4DNT9
AK299486 BAG61448 B4DRY6
BX648777 CAI46024 P49023

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PXN NP_001074324 R.norvegicus Pxn 360820   NP_001012147 95
M.musculus Pxn 19303 Gene Info NP_598676 94
A.gambiae AgaP_AGAP008532 1277441   XP_316909 55
D.melanogaster Pax 35215   NP_724183 54
C.elegans pxl-1 175831   NP_001122677 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)