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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLEC5A, C-type lectin domain family 5, member A
Sequence ID:NM_013252
Entrez Gene ID:23601
Ensembl ID:ENSG00000258227

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7q33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 141629665 - 141646717

NM_013252 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
142875141627156141630017
28762982141631519141631625
29833119141635613141635749
31203188141643695141643763
31893248141645140141645199
32493347141646013141646111
33483524141646606141646782

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7939559Full LengthBC093714C-type lectin domain family 5, member A
8327567Full LengthBC112099C-type lectin domain family 5, member A
40076723Full LengthBC113098C-type lectin domain family 5, member A
40076725Full LengthBC113099C-type lectin domain family 5, member A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_037384  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013252 NP_037384 Q9NY25 Lectin_C

Related Sequences

 
mRNAGenPeptSwissProt
AF139768 AAF02491 Q9NY25
BC093714 AAH93714 Q9NY25
BC112099 AAI12100 Q9NY25
BC113098 AAI13099 Q9NY25
BC113099 AAI13100 Q14DL9
AK292766 BAF85455 A4D1U7
AK313703 BAG36449 A4D1U7
AK295200 BAG58199 Q14DL9
AJ271684 CAB71334 Q9NY25

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLEC5A NP_037384 M.musculus Clec5a 23845 Gene Info NP_001033693 74
R.norvegicus Clec5a 679787   NP_001102847 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)