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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTPRD, protein tyrosine phosphatase, receptor type, D
Sequence ID:NM_001040712
NM_001171025
NM_002839
NM_130391
NM_130392
NM_130393
Entrez Gene ID:5789
Ensembl ID:ENSG00000153707

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9p23-p24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 8316923 - 8636837

 Exon Info From UCSC:
NM_001040712
NM_001171025
NM_002839
NM_130391
NM_130392
NM_130393

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40027581Full LengthBC106713protein tyrosine phosphatase, receptor type, D
40027582Full LengthBC106714protein tyrosine phosphatase, receptor type, D
40027584Full LengthBC106715protein tyrosine phosphatase, receptor type, D
40027585Full LengthBC106716protein tyrosine phosphatase, receptor type, D
5247444IncompleteBC028038protein tyrosine phosphatase, receptor type, D

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002830  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001040712 NP_001035802      
NM_001171025 NP_001164496      
NM_002839 NP_002830 P23468 EC 3.1.3.48 fn3
ig
Y_phosphatase
I-set
NM_130391 NP_569075      
NM_130392 NP_569076      
NM_130393 NP_569077      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
L38929 AAC41749 P23468 EC 3.1.3.48
BC106713 AAI06714 P23468 EC 3.1.3.48
BC106714 AAI06715 P23468 EC 3.1.3.48
BC106715 AAI06716 P23468 EC 3.1.3.48
BC106716 AAI06717 Q3KPI9  
AB208869 BAD92106 Q59H90  
AB211400 BAE79816 Q2HXI4  
AK296392 BAG59060 B4DK48  
X54133 CAA38068 P23468 EC 3.1.3.48

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTPRD NP_002830 R.norvegicus Ptprd 313278   XP_233065 98
A.gambiae AgaP_AGAP010090 1279520   XP_319248 53
D.melanogaster Lar 35259   NP_523604 45
C.elegans ptp-3 174685   NP_001122582 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)