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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC38A4, Solute carrier family 38, member 4
Sequence ID:NM_018018
NM_001143824
Entrez Gene ID:55089
Ensembl ID:ENSG00000139209

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 47158543 - 47186885

 Exon Info From UCSC:
NM_018018
NM_001143824

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262399Full LengthBC069819solute carrier family 38, member 4
8069333Full LengthBC101827solute carrier family 38, member 4
8143916Full LengthBC104913solute carrier family 38, member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060488  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001143824 NP_001137296    
NM_018018 NP_060488 Q969I6 Aa_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC069819 AAH69819 Q969I6
BC101827 AAI01828 Q969I6
BC104913 AAI04914 Q969I6
AF305814 AAK43528 Q969I6
AF193836 AAK71508 Q969I6
AK001053 BAA91481 Q9NWA2
AB055003 BAB84090 Q969I6
AK291168 BAF83857 Q969I6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC38A4 NP_001137296 R.norvegicus Slc38a4 170573   NP_570104 88
M.musculus Slc38a4 69354 Gene Info NP_081328 87
A.thaliana AT1G80510 844390   NP_565239 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)