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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. WSB1, WD repeat and SOCS box containing 1
Sequence ID:NM_015626
NM_134265
Entrez Gene ID:26118
Ensembl ID:ENSG00000109046

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 25621156 - 25639905

 Exon Info From UCSC:
NM_015626
NM_134265

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4865448Full LengthBC021110WD repeat and SOCS box-containing 1
3933251IncompleteBC005226WD repeat and SOCS box-containing 1
5296963IncompleteBC048007WD repeat and SOCS box-containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_599027  NP_056441  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015626 NP_056441 Q9Y6I7 WD40
SOCS_box
NM_134265 NP_599027   WD40
SOCS_box

Related Sequences

 
mRNAGenPeptSwissProt
AF069313 AAD20954 Q9Y6I7
AF072880 AAD28808 Q9Y6I7
AF106683 AAD43036 Q9Y6I7
AF106684 AAD43037 Q9Y656
AF112205 AAF17193 Q9Y6I7
AF240696 AAF82746 Q9Y6I7
BC005226 AAH05226 A0JLP1
BC021110 AAH21110 Q9Y6I7
HQ447739 ADQ32224  
AK074917 BAC11291 Q8NC76
AK222576 BAD96296 Q53HK4
AK294516 BAG57729 B4DGB8
AK300262 BAG62023 B4DTL1
AL110243 CAB53693 Q9Y6I7
AL110269 CAB53708 Q9Y6I7
AM393409 CAL38287  
AM393665 CAL38541  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens WSB1 NP_056441 M.musculus Wsb1 78889 Gene Info NP_062627 93
R.norvegicus Wsb1 303336   NP_001036026 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)