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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KHDRBS1, KH domain containing, RNA binding, signal transduction associated 1
Sequence ID:NM_006559
Entrez Gene ID:10657
Ensembl ID:ENSG00000121774

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 32479466 - 32526450

NM_006559 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14883247949032479977
4896133249589832496022
6147303249712432497240
7318773249878832498934
87810113250251032502643
101212133250343532503636
121412813250415232504219
128213403250511532505173
134126843250812732509470

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3505275Full LengthBC000717KH domain containing, RNA binding, signal transduction associated 1
3956853Full LengthBC010132KH domain containing, RNA binding, signal transduction associated 1
5094155Full LengthBC019109KH domain containing, RNA binding, signal transduction associated 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006550  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271878 NP_001258807    
NM_006559 NP_006550 Q07666 KH_1

Related Sequences

 
mRNAGenPeptSwissProt
M88108 AAA59990 Q07666
U78971 AAB47504 Q07666
BC000717 AAH00717 Q07666
BC010132 AAH10132 Q07666
BC019109 AAH19109 Q07666
DQ895323 ABM86249  
AK091346 BAC03643 Q07666
AK312916 BAG35762 B2R7B5
AK293369 BAG56883 B4DDX2
AK303218 BAG64305 B4E043

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KHDRBS1 NP_006550 M.musculus Khdrbs1 20218 Gene Info NP_035447 94
R.norvegicus Khdrbs1 117268   NP_569089 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta