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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL5A2, collagen, type V, alpha 2
Sequence ID:NM_000393
RefSeqGene ID:NG_011799
Entrez Gene ID:1290
Ensembl ID:ENSG00000204262

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
EHLERS-DANLOS SYNDROME, TYPE ICOL1A1
COL5A1

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q14-q32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 189897240 - 190044467

 Exon Info From UCSC:
NM_000393

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30708812Full LengthBC086874collagen, type V, alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000384  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000393 NP_000384 P05997 VWC
Collagen
COLFI

Related Sequences

 
mRNAGenPeptSwissProt
M11135 AAA51857 P05997
J04478 AAA51859 P05997
M10956 AAA52007 P05997
M11718 AAA52058 P05997
BC043613 AAH43613 P05997
BC086874 AAH86874 Q5PR22
AB209045 BAD92282 P05997
AK297936 BAG60252 B4DNJ0
AK300146 BAG61932 B4DTC0
X04758 CAA28454 P05997
Y14690 CAA75002 P05997

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL5A2 NP_000384 M.musculus Col5a2 12832 Gene Info NP_031763 95
R.norvegicus Col5a2 85250   NP_445940 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)