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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRA2A, Transformer 2 alpha homolog (Drosophila)
Sequence ID:NM_013293
Entrez Gene ID:29896
Ensembl ID:ENSG00000164548

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7p15.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 23544400 - 23571599

NM_013293 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
148002354440123545187
8018682354536423545431
8699972354575623545884
99811132354703823547153
111413022355251223552700
130314682355598123556146
146916022356132523561458
160318512357140723571655

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3907327Full LengthBC017094transformer 2 alpha homolog (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_037425  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013293 NP_037425 Q13595
Q549U1
RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
U53209 AAC50658 Q13595
Q549U1
BC017094 AAH17094 Q13595
Q549U1
DQ892442 ABM83368  
DQ895653 ABM86579  
AB052759 BAC53792 Q8IXF7
AB097048 BAC77401 Q13595
Q549U1
AK314801 BAG37329 Q549U1
AK298815 BAG60948 B4DQI6
AK300565 BAG62271 B4DUA9
AK300741 BAG62410 B4DUA9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRA2A NP_037425 M.musculus Tra2a 101214 Gene Info NP_932770 100
R.norvegicus Tra2a 500116   NP_001119768 100
A.gambiae AgaP_AGAP006798 1270267   XP_308949 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)