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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYN2, Synapsin II
Sequence ID:NM_003178
NM_133625
RefSeqGene ID:NG_011728
Entrez Gene ID:6854
Ensembl ID:ENSG00000157152

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
SCHIZOAFFECTIVEDISORDERAKT1
APOL1
APOL2
APOL4
CHI3L1
CHI3L1
COMT
DAO
DAOA
DISC1
DISC2
DRD3
DTNBP1
HTR2A
LGR4
MTHFR
MTHFR
RTN4R

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 12045879 - 12227228

 Exon Info From UCSC:
NM_003178
NM_133625

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5802100Full LengthBC051307synapsin II
4799736IncompleteBC040661synapsin II

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003169  NP_598328  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003178 NP_003169   Synapsin_N
Synapsin_C
NM_133625 NP_598328   Synapsin_N
Synapsin_C

Related Sequences

 
mRNAGenPeptSwissProt
AF077671 AAC28368 Q92777
AF077737 AAC33789 Q92777
U40215 AAC50718 Q92777
BC051307 AAH51307 Q86VA8
AB209088 BAD92325 Q59GM1
AK091286 BAG52325 B3KRB3
AK094464 BAG52870 B3KSV8
AK295431 BAG58374 B4DI62

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYN2 NP_598328 M.musculus Syn2 20965 Gene Info NP_001104485 96
R.norvegicus Syn2 29179   NP_001029192 95
A.gambiae AgaP_AGAP003318 4577141   XP_553315 42
D.melanogaster Syn 41247   NP_731459 41
C.elegans snn-1 176987   NP_741326 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)