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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNW1, SNW domain containing 1
Sequence ID:NM_012245
Entrez Gene ID:22938
Ensembl ID:ENSG00000100603

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 78183943 - 78227496

 Exon Info From UCSC:
NM_012245

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40006529Full LengthBC108903SNW domain containing 1
5111389IncompleteBC032377SNW domain containing 1
5123391IncompleteBC046105SNW domain containing 1
5581513IncompleteBC040112SNW domain containing 1
6015770IncompleteBC065286SNW domain containing 1
6738734IncompleteBC105585SNW domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036377  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_012245 NP_036377 Q13573 SKIP_SNW

Related Sequences

 
mRNAGenPeptSwissProt
U51432 AAC15912 Q13573
AF045184 AAC31697 Q13573
BC040112 AAH40112 Q13573
BC046105 AAH46105 Q13573
BC065286 AAH65286 Q6P151
BC105585 AAI05586 Q0D2M5
BC108903 AAI08904 Q13573
BT020060 AAV38863 Q13573
BT020061 AAV38864 Q13573
AK292274 BAF84963 Q13573
AK293619 BAG57078 B4DEG7
AK302246 BAG63598 B4DY36
AK316087 BAH14458 B7Z9X2
AX775981 CAE11690 Q13573
CR457433 CAG33714 Q6I9S2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNW1 NP_036377 M.musculus Snw1 66354 Gene Info NP_079783 99
R.norvegicus Snw1 500695   NP_001102749 99
A.gambiae AgaP_AGAP004521 1274667   XP_313821 67
D.melanogaster Bx42 31840   NP_511093 63
C.elegans skp-1 179598   NP_505950 58
A.thaliana SKIP 844055   NP_001031291 53
N.crassa NCU03799 3877348   XP_961188 50
S.pombe prp45 2538988   NP_588213 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)