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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LGALS1, lectin, galactoside-binding, soluble, 1
Sequence ID:NM_002305
Entrez Gene ID:3956
Ensembl ID:ENSG00000100097

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 38071660 - 38075807

NM_002305 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11063807161238071717
1071863807299238073071
1873583807448938074660
3595563807560938075806

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2967299Full LengthBC001693lectin, galactoside-binding, soluble, 1
4722280Full LengthBC020675lectin, galactoside-binding, soluble, 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002296  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002305 NP_002296 P09382 Gal-bind_lectin

Related Sequences

 
mRNAGenPeptSwissProt
J04456 AAA36170 P09382
S44881 AAB19412 Q15954
BC001693 AAH01693 P09382
BC020675 AAH20675 P09382
BT006775 AAP35421 P09382
DQ892263 ABM83189  
DQ895465 ABM86391  
EU363770 ACA58297 P09382
D28452 BAA05818  
AB097036 BAC77389 P09382
AK312161 BAG35095 P09382
X14829 CAA32938 P09382
X15256 CAA33328 P09382
CR456511 CAG30397 P09382
CU013110 CAK54541  
CU013398 CAK54840  
AM392658 CAL37536  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LGALS1 NP_002296 R.norvegicus Lgals1 56646   NP_063969 90
M.musculus Lgals1 16852 Gene Info NP_032521 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)