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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. DEPDC1, DEP domain containing 1
Sequence ID:NM_001114120
NM_017779
Entrez Gene ID:55635
Ensembl ID:ENSG00000024526

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p31.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 68939834 - 68962760

 Exon Info From UCSC:
NM_001114120
NM_017779

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6156084Full LengthBC065304DEP domain containing 1
3349960IncompleteBC011743DEP domain containing 1
3353922IncompleteBC035506DEP domain containing 1
3546864IncompleteBC003511DEP domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060249  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001114120 NP_001107592 Q5TB30  
NM_017779 NP_060249   DEP
RhoGAP

Related Sequences

 
mRNAGenPeptSwissProt
BC003511 AAH03511 Q5TB30
BC065304 AAH65304 Q5TB30
AK000361 BAA91111 Q9NXA5
AK000490 BAA91201 Q5TB30
AK022792 BAB14246 Q5TB30
AB281187 BAF91373 Q5TB30
AB281274 BAF91374 Q5TB30
AK299324 BAH13001 B7Z5R5
AJ278112 CAB92444 Q5TB30
AL834208 CAH10663 Q69YG3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DEPDC1 NP_001107592 M.musculus Depdc1a 76131 Gene Info NP_001165563 83
R.norvegicus Depdc1 295538   XP_227798 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)