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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC1A1, solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
Sequence ID:NM_004170
RefSeqGene ID:NG_017044
Entrez Gene ID:6505
Ensembl ID:ENSG00000106688

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9p24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 4490488 - 4587260

 Exon Info From UCSC:
NM_004170

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5261168Full LengthBC033040solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004161  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004170 NP_004161 P43005 SDF

Related Sequences

 
mRNAGenPeptSwissProt
U03506 AAA50430 P43005
U06469 AAA53215 P43005
U08989 AAA68628 P43005
AF037982 AAC25029 P43005
BC033040 AAH33040 P43005
DQ892425 ABM83351  
DQ895639 ABM86565  
AB008536 BAB83767 P43005
AK313013 BAG35848 B2R7K1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC1A1 NP_004161 R.norvegicus Slc1a1 25550   NP_037164 91
M.musculus Slc1a1 20510 Gene Info NP_033225 90
A.gambiae AgaP_AGAP006718 1270340   XP_309025 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)