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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CNOT10, CCR4-NOT transcription complex, subunit 10
Sequence ID:NM_001256741
NM_001256742
NM_015442
NR_046352
Entrez Gene ID:25904
Ensembl ID:ENSG00000182973

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 32746435 - 32815204


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3954507Full LengthBC002928CCR4-NOT transcription complex, subunit 10
3955575Full LengthBC002931CCR4-NOT transcription complex, subunit 10

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056257  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001256741 NP_001243670    
NM_001256742 NP_001243671    
NM_015442 NP_056257 Q9H9A5 TPR_1

Related Sequences

 
mRNAGenPeptSwissProt
BC002928 AAH02928 Q9H9A5
BC002931 AAH02931 Q9H9A5
DQ892895 ABM83821  
DQ896143 ABM87142  
EU831581 ACE86500  
EU831494 ACE87181  
AK021695 BAB13876 Q9H9A5
AK022576 BAB14108 Q9H9A5
AK022952 BAB14327 Q9H9A5
AK023227 BAB14478 Q9H9A5
AK027026 BAB15629 Q9H9A5
AK297085 BAH12492 B7Z4A6
AK298693 BAH12849 B7Z5B3
AK302196 BAH13647 B7Z7L1
AL117639 CAB56027 Q9H9A5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNOT10 NP_056257 M.musculus Cnot10 78893 Gene Info NP_705813 96
R.norvegicus Cnot10 316034   NP_001007004 96
A.gambiae AgaP_AGAP009674 1279063   XP_318732 33
A.thaliana AT5G35430 833507   NP_198393 30
D.melanogaster CG18616 41552   NP_650215 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)