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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VMP1, Vacuole membrane protein 1
Sequence ID:NM_030938
Entrez Gene ID:81671
Ensembl ID:ENSG00000062716

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q23.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 57808807 - 57917272

 Exon Info From UCSC:
NM_030938

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3927937Full LengthBC009758transmembrane protein 49

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030938 NP_112200 Q96GC9  

Related Sequences

 
mRNAGenPeptSwissProt
AF161410 AAF28970 Q96GC9
BC009758 AAH09758 Q96GC9
AF214006 AAL36461 Q96GC9
DQ892569 ABM83495  
AB047551 BAF47368 Q96GC9
AK293578 BAG57048 B4DED7
AK293664 BAG57110 B4DEJ9
AK294854 BAG57958 B4DGZ7
AK301254 BAG62821 B4DVV9
AL136711 CAB66646 Q96GC9
AX775965 CAE11682 Q96GC9
CR533521 CAG38552 Q96GC9
AM393551 CAL38428  
AM393627 CAL38503  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VMP1 NP_112200 R.norvegicus Vmp1 192129   NP_620194 95
M.musculus Vmp1 75909 Gene Info NP_083754 94
D.melanogaster Tango5 326232   NP_727445 56
A.gambiae AgaP_AGAP010304 1278597   XP_318214 54
C.elegans Y37D8A.22 176712   NP_499688 49
A.thaliana AT4G14950 827153   NP_567450 39
A.thaliana AT1G05360 837035   NP_563735 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)