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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLPTM1, Cleft lip and palate associated transmembrane protein 1
Sequence ID:NM_001294
Entrez Gene ID:1209
Ensembl ID:ENSG00000104853

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 45458637 - 45496599

 Exon Info From UCSC:
NM_001294

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3840991Full LengthBC004865cleft lip and palate associated transmembrane protein 1
4685026Full LengthBC012359cleft lip and palate associated transmembrane protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001285  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001294 NP_001285 O96005 CLPTM1

Related Sequences

 
mRNAGenPeptSwissProt
AF037339 AAC98151 O96005
BC004865 AAH04865 O96005
BC012359 AAH12359 O96005
BT007262 AAP35926 O96005
DQ892236 ABM83162  
DQ895436 ABM86362  
AK223553 BAD97273 O96005
AK074935 BAG52034 B3KQH2
AK293314 BAG56834 B4DDS3
AK304480 BAG65291 B4E2X9
AK316094 BAH14465 B7Z9X9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLPTM1 NP_001285 M.musculus Clptm1 56457 Gene Info NP_062623 95
R.norvegicus Clptm1 292696   NP_001099702 95
A.gambiae AgaP_AGAP007926 1278029   XP_317556 54
C.elegans C36B7.6 180976   NP_509196 54
D.melanogaster CG3702 33628   NP_608819 54
C.elegans R166.2 174620   NP_496269 51
A.thaliana AT5G23575 832423   NP_680213 45
A.thaliana AT5G08500 830749   NP_196467 44
N.crassa NCU06710 3877052   XP_960890 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)