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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOCS6, Suppressor of cytokine signaling 6
Sequence ID:NM_004232
Entrez Gene ID:9306
Ensembl ID:ENSG00000170677

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18q22.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 67991904 - 67993512

NM_004232 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11906795613667956325
19158466799177867997433

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3917519Full LengthBC020082suppressor of cytokine signaling 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004223  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004232 NP_004223 O14544 SH2
SOCS_box

Related Sequences

 
mRNAGenPeptSwissProt
AF161545 AAF29032 Q9NZX6
BC020082 AAH20082 O14544
AB006968 BAA22538 O14544

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOCS6 NP_004223 M.musculus Socs6 54607 Gene Info NP_061291 86
R.norvegicus Socs6 307200   XP_225667 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)