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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IFT52, intraflagellar transport 52 homolog (Chlamydomonas)
Sequence ID:NM_016004
Entrez Gene ID:51098
Ensembl ID:ENSG00000101052

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Unknown

Chromosomal Position (from UCSC)

Chromosomal Position:20: 42219629 - 42275862

 Exon Info From UCSC:
NM_016004

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6095634Full LengthBC039831intraflagellar transport 52 homolog (Chlamydomonas)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016004 NP_057088 Q9Y366  

Related Sequences

 
mRNAGenPeptSwissProt
AF151811 AAD34048 Q9Y366
BC039831 AAH39831 Q9Y366
JF432384 ADZ15601  
AK001436 BAG50913 Q9Y366
AK301915 BAG63339 B4DXC7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IFT52 NP_057088 M.musculus Ift52 245866 Gene Info NP_742162 92
R.norvegicus Ift52 362265   XP_002729297 92
A.gambiae AgaP_AGAP008725 1275575   XP_314836 45
C.elegans osm-6 179631   NP_741633 40
D.melanogaster osm-6 33917   NP_609045 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)