Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BPTF, Bromodomain PHD finger transcription factor
Sequence ID:NM_182641
NM_004459
Entrez Gene ID:2186
Ensembl ID:ENSG00000171634

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 65821780 - 65979269

 Exon Info From UCSC:
NM_182641
NM_004459

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3870623IncompleteBC050566bromodomain PHD finger transcription factor
4557629IncompleteBC067234bromodomain PHD finger transcription factor
5497063IncompleteBC037422fetal Alzheimer antigen

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004450  NP_872579  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004459 NP_004450   Bromodomain
PHD
DDT
NM_182641 NP_872579   Bromodomain
PHD
DDT

Related Sequences

 
mRNAGenPeptSwissProt
U05237 AAA97522 Q12830
BC050566 AAH50566 Q86TN2
BC067234 AAH67234 Q12830
AY282495 AAP22284 Q12830
AB032251 BAA89208 Q12830
AK027184 BAB15686 Q9H5E0
AK293224 BAG56763 B4DDK2
AK296256 BAG58970 B4DJV8
AK297281 BAG59752 B4DM40

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BPTF NP_872579 M.musculus Bptf 207165 Gene Info NP_789820 84
D.melanogaster E(bx) 44811   NP_001163305 37
A.gambiae AgaP_AGAP006133 3290113   XP_316196 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)