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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PPHLN1, periphilin 1
Sequence ID:NM_001143787
NM_001143788
NM_001143789
NM_016488
NM_201438
NM_201439
NM_201440
NM_201515
Entrez Gene ID:51535
Ensembl ID:ENSG00000134283

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 42719982 - 42835342

 Exon Info From UCSC:
NM_001143787
NM_001143788
NM_001143789
NM_016488
NM_201438
NM_201439
NM_201440
NM_201515

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6051282Full LengthBC039832periphilin 1
4893383IncompleteBC025306periphilin 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001143787 NP_001137259    
NM_001143788 NP_001137260    
NM_001143789 NP_001137261    
NM_016488 NP_057572 Q8NEY8  
NM_201438 NP_958846    
NM_201439 NP_958847    
NM_201440 NP_958848    
NM_201515 NP_958923    

Related Sequences

 
mRNAGenPeptSwissProt
AF151040 AAF36126 Q8NEY8
AF151066 AAF36152 Q8NEY8
BC025306 AAH25306 Q8NEY8
BC039832 AAH39832 Q8NEY8
AY039238 AAK68657 Q8NEY8
AY157850 AAO16497 Q8NEY8
HQ448511 ADQ32990  
AK000186 BAA90996 Q8NEY8
AK055690 BAB70985 Q8NEY8
AK299951 BAH13181 B7Z695
AK303612 BAH13997 B7Z8L1
AK303680 BAH14015 B7Z8M9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PPHLN1 NP_958923 R.norvegicus Pphln1 366975   NP_001102462 84
M.musculus Pphln1 223828 Gene Info NP_666174 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)