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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CSTF3, cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
Sequence ID:NM_001033505
NM_001033506
NM_001326
Entrez Gene ID:1479
Ensembl ID:ENSG00000176102

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 33106310 - 33183037

 Exon Info From UCSC:
NM_001033505
NM_001033506
NM_001326

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6197136Full LengthBC108319cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
3454015IncompleteBC010533cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001317  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001033505 NP_001028677    
NM_001033506 NP_001028678    
NM_001326 NP_001317 Q12996 Suf

Related Sequences

 
mRNAGenPeptSwissProt
U15782 AAA61417 Q12996
BC009792 AAH09792 Q12996
BC010533 AAH10533 Q12996
BC059948 AAH59948 Q12996
BC108319 AAI08320 Q12996
HQ447885 ADQ32369  
AK290836 BAF83525 Q12996
AK294204 BAG57516 B4DFQ5
AK297371 BAG59816 B4DMA4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CSTF3 NP_001317 M.musculus Cstf3 228410 Gene Info NP_663504 99
R.norvegicus Cstf3 362178   NP_001071140 97
A.gambiae AgaP_AGAP003019 1272933   XP_311858 60
D.melanogaster su(f) 3354994   NP_001015240 59
C.elegans suf-1 174380   NP_495825 51
A.thaliana CSTF77 838354   NP_173218 37
S.pombe rna14 2541600   NP_593303 35
N.crassa NCU09435 3874734   XP_958587 34
S.cerevisiae RNA14 855083   NP_013777 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta