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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VPS45, vacuolar protein sorting 45 homolog (S. cerevisiae)
Sequence ID:NM_007259
Entrez Gene ID:11311
Ensembl ID:ENSG00000136631

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 150039869 - 150117501

 Exon Info From UCSC:
NM_007259

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3853152Full LengthBC012932vacuolar protein sorting 45 homolog (S. cerevisiae)
4818323Full LengthBC028382vacuolar protein sorting 45 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009190  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007259 NP_009190 Q9NRW7 Sec1

Related Sequences

 
mRNAGenPeptSwissProt
U35246 AAC50931 Q9NRW7
AF165513 AAF86643 Q9NRW7
BC012932 AAH12932 Q9NRW7
BC028382 AAH28382 Q9NRW7
AY453586 AAS49034 A0AR27
JF432313 ADZ15530  
AK023170 BAB14443 Q9NRW7
AK223214 BAD96934 Q53FR8
AK293555 BAH11533 B7Z1J7
AK295529 BAH12096 B7Z360
AK298786 BAH12870 B7Z5D4
AK298835 BAH12880 B7Z5E4
AK301994 BAH13603 B7Z7G7
AJ133421 CAB40417 Q9NRW7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS45 NP_009190 M.musculus Vps45 22365 Gene Info NP_038869 97
R.norvegicus Vps45 64516   NP_742069 97
A.gambiae AgaP_AGAP003980 1278798   XP_318430 57
D.melanogaster Vps45 41153   NP_649909 56
N.crassa NCU06192 3879152   XP_963004 51
C.elegans vps-45 180449   NP_741714 49
A.thaliana VPS45 844050   NP_565150 47
S.pombe vps45 2541485   NP_593083 43
S.cerevisiae VPS45 852785   NP_011420 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)