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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SETD8, SET domain containing (lysine methyltransferase) 8
Sequence ID:NM_020382
Entrez Gene ID:387893
Ensembl ID:ENSG00000183955

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 123868694 - 123892571

NM_020382 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
152123868703123868754
53174123873979123874100
175331123875176123875332
332551123879593123879812
552639123880891123880978
640699123888119123888178
700890123889430123889620
8912749123892039123893897

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4838030Full LengthBC050346SET domain containing (lysine methyltransferase) 8

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065115  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020382 NP_065115   SET

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF287261 AAF97812 Q9NQR1 EC 2.1.1.43
BC050346 AAH50346 Q9NQR1 EC 2.1.1.43
AY064546 AAL40879 Q9NQR1 EC 2.1.1.43
AY102937 AAM47033 Q9NQR1 EC 2.1.1.43
HQ259683 ADP08984 E3VVS3  
HQ448034 ADQ32515    
AK292645 BAF85334 Q9NQR1 EC 2.1.1.43

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SETD8 NP_065115 R.norvegicus Setd8 689820   XP_001072149 93
M.musculus Setd8 67956 Gene Info NP_084517 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)